enriched_heatmap_list_on_genomic_features: Enriched heatmaps to visualize how signals are enriched at a...
In eilslabs/epic: Integrative Analysis and Visualization of Epigenomic Sequencing Data

Enriched heatmaps to visualize how signals are enriched at a certain genomic feature

1	enriched_heatmap_list_on_genomic_features(cr, gf, hm_list = NULL, hm_name = NULL, ...)

`cr`	filtered correlated regions from `filter_correlated_regions`
`gf`	genomic features, e.g. TFBS or enhancers, a `GRanges` object
`hm_list`	a list of ChIP-Seq peaks
`hm_name`	names for the peaks
`...`	pass to `draw,EnrichedHeatmapList-method`

Following signals are visualized around specified genomic features:

correlated regions (positive correlated regions and negative correlated regions can be subsetted by corr column in the object)
width of genomic features
mean intensity of peaks in each subgroup
mean methylation in each subgroup

No value is returned.

Zuguang Gu <z.gu@dfkz.de>

1 2	# There is no example NULL

eilslabs/epic documentation built on May 16, 2019, 1:24 a.m.

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