wgbs_qcplot: Basic qc plot for bisulfite sequencing data

In eilslabs/epic: Integrative Analysis and Visualization of Epigenomic Sequencing Data

Description

Basic qc plot for bisulfite sequencing data

Usage

wgbs_qcplot(sample_id, chromosome = paste0("chr", 1:22))

Arguments

sample_id	a vector of sample ids
chromosome	a vector of chromosome names

Details

For each sample id, it will produce five plots:

• mean/median CpG coverage per chromosome

• histogram of CpG coverage

• methylation per chromosome

• histogram of methylation

• mean Methylation for each CpG coverage

Value

A list of corresponding statistics

Author(s)

Zuguang Gu <[e-mail]>

Examples

# There is no example
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eilslabs/epic documentation built on May 16, 2019, 1:24 a.m.