generate_descr: Write paragraph containing process details

In espors/idepGolem: Integrated Differential Expression and Pathway Analysis

Write paragraph containing process details

Description

Write paragraph containing process details

Usage

generate_descr(
  missing_value,
  data_file_format,
  low_filter_fpkm,
  n_min_samples_fpkm,
  log_transform_fpkm,
  log_start_fpkm,
  min_counts,
  n_min_samples_count,
  counts_transform,
  counts_log_start,
  no_fdr
)

Arguments

missing_value	Method to deal with missing data
data_file_format	Type of data being examined
low_filter_fpkm	Low count filter for the fpkm data
n_min_samples_fpkm	Min samples for fpkm data
log_transform_fpkm	Type of transformation for fpkm data
log_start_fpkm	Value added to log transformation for fpkm
min_counts	Low count filter for count data
n_min_samples_count	Min sample for count data
counts_transform	Type of transformation for counts data
counts_log_start	Value added to log for counts data
no_fdr	Fold changes only data with no p values

Value

string with process summary

espors/idepGolem documentation built on April 23, 2024, 1:11 p.m.