View source: R/fct_08_bicluster.R
get_biclustering | R Documentation |
Utilize the biclust package to run biclustering on the processed data for a selected number of genes.
get_biclustering(data, n_genes, biclust_method)
data |
Matrix of gene data that has been through the
|
n_genes |
Number of most variable genes to include in the analysis |
biclust_method |
String indicating the method of biclustering to perform. Should be one of "biclust::BCCC()", "QUBIC::BCQU()", "runibic::BCUnibic()", "biclust::BCXmotifs()", "biclust::BCPlaid()", "biclust::BCSpectral()", "biclust::BCBimax()", "biclust::BCQuest()" |
A list containing two object. data
is the submatrix from the
processed data with the biclust function discetize
performed on it.
For information on this function visit
https://rdrr.io/cran/biclust/man/discretize.html. res
is the return
from using the biclust
function with the selected method. For
information on this function visit
https://www.rdocumentation.org/packages/biclust/versions/2.0.3/topics/biclust.
BCCC()
, BCXmotifs()
,
BCPlaid()
, BCXmotifs()
,
BCPlaid()
, BCSpectral()
,
BCBimax()
, BCquest()
for
specific function documentation from the biclust package
BCQU()
, BCQU()
for specific
function documentation from the QUBIC package
BCUnibic()
, BCUnibic()
for specific function documentation from the runibic package
Other bicluster functions:
bicluster_summary_message()
,
get_biclust_table_data()
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