get_idep_data: Load iDEP data
In espors/idepGolem: Integrated Differential Expression and Pathway Analysis
get_idep_data R Documentation
Load iDEP data
Description
Use this function call to load data that is
used in other functions.
Usage
get_idep_data(datapath = DATAPATH)
Arguments
datapath
Folder path to the iDEP data
Value
Large list of the iDEP data.
1. kegg_species_id: KEGG species list
2. gmt_files: list of pathway files
3. gene_info_files: list of geneInfo files
4. demo_data_file: demo data file
5. demo_metadata_file: experimental design file for demo data
6. quotes: quotes
7. string_species_go_data: List of STRING species
8. org_info: orgInfo for Ensembl species
9. annotated_species_count: total number of annotated species
10. go_levels: GO levels
11. go_level_2_terms: mapping of GO levels to terms
12. id_index: idtype and index
13. species_choice: list of species for populating selection.
espors/idepGolem documentation built on Oct. 27, 2024, 4:56 a.m.
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| get_idep_data | R Documentation |
Load iDEP data
Description
Use this function call to load data that is used in other functions.
Usage
get_idep_data(datapath = DATAPATH)
Arguments
datapath |
Folder path to the iDEP data |
Value
Large list of the iDEP data. 1. kegg_species_id: KEGG species list 2. gmt_files: list of pathway files 3. gene_info_files: list of geneInfo files 4. demo_data_file: demo data file 5. demo_metadata_file: experimental design file for demo data 6. quotes: quotes 7. string_species_go_data: List of STRING species 8. org_info: orgInfo for Ensembl species 9. annotated_species_count: total number of annotated species 10. go_levels: GO levels 11. go_level_2_terms: mapping of GO levels to terms 12. id_index: idtype and index 13. species_choice: list of species for populating selection.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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