get_network: Network of top genes

In espors/idepGolem: Integrated Differential Expression and Pathway Analysis

Network of top genes

Description

Create a network plot of the top genes found with the WGCNA package.

Usage

get_network(
  select_wgcna_module,
  wgcna,
  top_genes_network,
  select_org,
  all_gene_info,
  edge_threshold
)

Arguments

select_wgcna_module	The module to create a plot of the top genes for, options can be found with the get_wgcna_modules function
wgcna	List returned from the get_wgcna
top_genes_network	Number of genes to include in the network plot
select_org	Organism the expression data is for
all_gene_info	Gene info that was found from querying the database
edge_threshold	Value from 1 to 0.1 (0.4 recommended)

Value

An adjacency matrix of the top genes in the selected module

espors/idepGolem documentation built on Oct. 27, 2024, 4:56 a.m.