heat_sub: Draw sub heatmap from brush input

In espors/idepGolem: Integrated Differential Expression and Pathway Analysis

Draw sub heatmap from brush input

Description

Use the brush input from the main heatmap to create a larger subheatmap.

Usage

heat_sub(
  ht_brush,
  ht,
  ht_pos_main,
  heatmap_data,
  sample_info,
  select_factors_heatmap,
  cluster_meth
)

Arguments

ht_brush	Brush input from the main heatmap
ht	Main heatmap object
ht_pos_main	Position of brush on main heatmap
heatmap_data	Matrix of data for the heatmap from process_heatmap_data()
sample_info	Matrix of experiment design file information
select_factors_heatmap	Group design to label by
cluster_meth	Integer indicating which clustering method to use 1 for hierarchical and 2 for kmeans.

Value

A list containing a Heatmap from the brush selection of the main heatmap, the submap data matrix, the groups for the submap, the submap legend, and data for the click info.

See Also

Other heatmaps: cluster_heat_click_info(), heatmap_main(), process_heatmap_data(), sub_heat_ann()

Other clustering functions: cluster_heat_click_info(), draw_sample_tree(), heatmap_main(), k_means_elbow(), process_heatmap_data(), sd_density(), sub_heat_ann()

espors/idepGolem documentation built on Oct. 27, 2024, 4:56 a.m.