View source: R/fct_02_pre_process.R
mean_sd_plot | R Documentation |
Create a plot that shows the standard deviation as the Y-axis across the mean of the counts data on the X-axis. Option to make the X-axis the rank of the mean which does a better job showing the spread of the data.
mean_sd_plot(processed_data, rank, heat_cols)
processed_data |
Matrix of data that has gone through
|
rank |
TRUE/FALSE whether to use the rank of the mean or not |
heat_cols |
Heat color to use with black in the plot |
A formatted ggplot
hexplot of the mean and standard
deviation of the processed data
Other plots:
PCA_plot()
,
chr_counts_ggplot()
,
chr_normalized_ggplot()
,
cor_plot()
,
draw_sample_tree()
,
eda_boxplot()
,
eda_density()
,
eda_scatter()
,
gene_counts_ggplot()
,
individual_plots()
,
k_means_elbow()
,
rRNA_counts_ggplot()
,
sd_density()
,
t_SNE_plot()
,
total_counts_ggplot()
Other preprocess functions:
chr_counts_ggplot()
,
chr_normalized_ggplot()
,
eda_boxplot()
,
eda_density()
,
eda_scatter()
,
gene_counts_ggplot()
,
individual_plots()
,
pre_process()
,
rRNA_counts_ggplot()
,
total_counts_ggplot()
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