plot_ma: Plot mean expression and fold change
In espors/idepGolem: Integrated Differential Expression and Pathway Analysis
plot_ma R Documentation
Plot mean expression and fold change
Description
Draw a ggplot of the overal mean expression for each gene
and the calculated fold change for the selected comparison.
Usage
plot_ma(data, plot_colors, anotate_genes = NULL)
Arguments
data
Dataframe of processed data from volcano_data()
plot_colors
List containing three colors to differentiate between
the up-regulated, down-regulated, and other genes
anotate_genes
List containing the gene names to be labeled on the
plot. Default is NULL.
Value
A ggplot with the X-axis the mean expression value and
the Y-axis the calculated fold-change from the DEG analysis.
espors/idepGolem documentation built on April 23, 2024, 1:11 p.m.
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| plot_ma | R Documentation |
Plot mean expression and fold change
Description
Draw a ggplot of the overal mean expression for each gene and the calculated fold change for the selected comparison.
Usage
plot_ma(data, plot_colors, anotate_genes = NULL)
Arguments
data |
Dataframe of processed data from |
plot_colors |
List containing three colors to differentiate between the up-regulated, down-regulated, and other genes |
anotate_genes |
List containing the gene names to be labeled on the plot. Default is NULL. |
Value
A ggplot with the X-axis the mean expression value and the Y-axis the calculated fold-change from the DEG analysis.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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