plot_volcano: Volcano DEG plot
In espors/idepGolem: Integrated Differential Expression and Pathway Analysis
plot_volcano R Documentation
Volcano DEG plot
Description
Use the results from limma-value to create a volcano plot to
illustrate the significantly expressed genes. Up and down
regulated genes are colored on the ggplot.
Usage
plot_volcano(data, anotate_genes = NULL, plot_colors)
Arguments
data
Dataframe of processed data from volcano_data().
anotate_genes
List of gene names to annotate. Default is NULL.
plot_colors
List containing three colors to differentiate between
the up-regulated, down-regulated, and other genes
Value
ggplot with the fold value as the X-axis and the log 10
value of the adjusted p-value as the Y-axis.
espors/idepGolem documentation built on April 23, 2024, 1:11 p.m.
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| plot_volcano | R Documentation |
Volcano DEG plot
Description
Use the results from limma-value to create a volcano plot to illustrate the significantly expressed genes. Up and down regulated genes are colored on the ggplot.
Usage
plot_volcano(data, anotate_genes = NULL, plot_colors)
Arguments
data |
Dataframe of processed data from |
anotate_genes |
List of gene names to annotate. Default is NULL. |
plot_colors |
List containing three colors to differentiate between the up-regulated, down-regulated, and other genes |
Value
ggplot with the fold value as the X-axis and the log 10 value of the adjusted p-value as the Y-axis.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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