Description Usage Arguments Value
View source: R/branchpoint-investigation.R
For a given pair of segments, this shows the branchpoint fusion details in the form of a series of distributionplots. Each moving window through pseudotime that was considered is rendered as a plot, in order of pseudotime. (So, the first plots are near the root.) The distribution of visitation preference for cells within the windows is plotted (-1 is cells visited exclusively by seg.1, 0 is cells visited equally, and 1 is cells visited exclusively by seg.2). Plots are titled with the window number, p-value (drawn from the test used during construction of the tree), and the determination of whether cell visitation within the window is significantly different (TRUE) or not (FALSE).
1 2 3 4 5 6 7 8 | branchpointDetailsPreferenceDist(
object,
seg.1,
seg.2,
file = NULL,
file.width = 375,
file.height = 300
)
|
object |
An URD object |
seg.1 |
(Character) Segment 1 of fusion |
seg.2 |
(Character) Segment 2 of fusion |
file |
(Character) Path to save plot to. (If |
file.width |
(Numeric) Width per plot (in pixels) if saving file. |
file.height |
(Numeric) Height per plot (in pixels) if saving file. |
Nothing. If file==NULL
, will display a plot, otherwise will produce a file.
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