Description Usage Arguments Value
The Dropseq pipeline produces output summary files that describe the number of genes, UMIs, and reads per cell barcode. This reads them in from several files and collates them into a single data.table.
1 2 3 4 5 6 | dsReadStats(
dge.summary.reports,
cell.readcount.reports = NULL,
sample.names,
name.cells.with.sample = T
)
|
dge.summary.reports |
(Character vector) Paths of DGE report files. (These files typically end with the suffix ".report_dge.summary.txt") |
cell.readcount.reports |
(Character vector) Paths of cell readcount reports for getting number of reads per cell. (These files typically end with the suffix ".report_cell_readcounts.txt.gz") |
sample.names |
(Character vector) Names of samples. |
name.cells.with.sample |
(Logical) Convert cell barcodes to cell names? |
Returns a data.frame with cells as rows, and metadata as columns.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.