cellDistByExpression: Calculates the distance matrix between cells given their gene...
In farrellja/URD: URD
Description
Usage
Arguments
Value
Description
Calculates distance between cells in gene expression space. Can be passed to tipPotential.
Usage
1
2
3
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cellDistByExpression(
object,
genes.use = object@var.genes,
return.as.matrix = T
)
Arguments
object
An URD object
genes.use
(Character vector) Which genes to use for distance calculation (default: variable genes. NULL is all genes)
return.as.matrix
(Logical) Return value as a matrix (memory hungry, but used for other URD functions) or as a dist object.
Value
Returns the distance between cells in gene expression space, either as a matrix
(if return.as.matrix=T) or a dist object.
farrellja/URD documentation built on June 17, 2020, 4:48 a.m.
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Description Usage Arguments Value
Description
Calculates distance between cells in gene expression space. Can be passed to tipPotential.
Usage
1 2 3 4 5 | cellDistByExpression(
object,
genes.use = object@var.genes,
return.as.matrix = T
)
|
Arguments
object |
An URD object |
genes.use |
(Character vector) Which genes to use for distance calculation (default: variable genes. NULL is all genes) |
return.as.matrix |
(Logical) Return value as a matrix (memory hungry, but used for other URD functions) or as a dist object. |
Value
Returns the distance between cells in gene expression space, either as a matrix
(if return.as.matrix=T) or a dist object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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