clusterCentroids: Cluster centroids in gene expression space

Description Usage Arguments Value Examples

View source: R/cluster.R

Description

Cluster centroids in gene expression space

Usage

1
clusterCentroids(object, clustering, genes.use = object@var.genes)

Arguments

object

An URD object

clustering

(Character) Name of a clustering (i.e. a column in @group.ids)

genes.use

(Character vector) Genes to use for calculating distance (default: variable genes, NULL is all genes)

Value

A data.frame with mean gene expression per cluster in rows, and clusters as columns.

Examples

1
cc <- clusterCentroids(object, "Louvain-15", genes.use=object@var.genes)

farrellja/URD documentation built on June 17, 2020, 4:48 a.m.