dsMetaTrim: Plot and trim Dropseq DGE tables by metadata

In farrellja/URD: URD

Description

Plot and trim Dropseq DGE tables by metadata

Usage

dsMetaTrim(
  dge.table,
  ds.meta,
  cell.name = "CELL",
  meta.name,
  meta.min = NULL,
  meta.max = NULL,
  title = "UMIs per cell",
  x.lim = NULL,
  breaks = 150
)

Arguments

dge.table	(Matrix or data.frame) Gene expression table
ds.meta	(data.frame) Metadata
cell.name	(Character) Column name of ds.meta that corresponds to column names of dge.table (default: "CELL")
meta.name	(Character) Column name of ds.meta to use for filtering cells
meta.min	(Numeric) Minimum acceptable value of metadata (default: NULL)
meta.max	(Numeric) Maximum acceptable value of metadata (default: NULL)
title	(Character) Histogram title (default: "UMIs per cell")
breaks	(Numeric) Histogram bins (default: 150)
xlim	(Numeric) Histogram x-axis limits (default: NULL)

farrellja/URD documentation built on June 17, 2020, 4:48 a.m.