calcKNN: Calculate k-nearest neighbor graph
In farrellja/URD: URD
Description
Usage
Arguments
Value
Description
Calculates and stores a k-nearest neighbor graph based on Euclidean distance in
gene expression space. This is useful for finding and removing outliers prior
to calculating a diffusion map.
Usage
1
calcKNN(object, genes.use = object@var.genes, nn = 100)
Arguments
object
An URD object
genes.use
Genes to use for distance (default is variable genes, NULL is all genes.)
nn
(Numeric) Number of nearest neighbors
Value
An URD object with k-nn graph in slot knn.
farrellja/URD documentation built on June 17, 2020, 4:48 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Calculates and stores a k-nearest neighbor graph based on Euclidean distance in gene expression space. This is useful for finding and removing outliers prior to calculating a diffusion map.
Usage
1 | calcKNN(object, genes.use = object@var.genes, nn = 100)
|
Arguments
object |
An URD object |
genes.use |
Genes to use for distance (default is variable genes, NULL is all genes.) |
nn |
(Numeric) Number of nearest neighbors |
Value
An URD object with k-nn graph in slot knn.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.