geneCascadeHeatmap: Plot Gene Cascade Heatmap

Description Usage Arguments

View source: R/gene-cascade.R

Description

Plot Gene Cascade Heatmap

Usage

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geneCascadeHeatmap(
  cascade,
  color.scale = RColorBrewer::brewer.pal(9, "YlOrRd"),
  add.time = NULL,
  times.annotate = seq(0, 1, 0.1),
  title = "",
  annotation.list = NULL,
  row.font.size = 1,
  max.font.size = 0.9
)

Arguments

cascade

(list) A processed gene cascade from geneCascadeProcess

color.scale

(Character vector) List of color values to use for the heatmap

add.time

(Character or NULL) Either the name of a column of @meta that contains actual time information to label the x-axis of the heatmap or NULL to instead use pseudotime

times.annotate

(Numeric vector)

annotation.list

Color bar

row.font.size

(Numeric) The font size of rows (gene names) should scale automatically, but this allows manual adjustment if needed.

max.font.size

(Numeric) This is used to prevent the font from getting big enough that it runs off the page.


farrellja/URD documentation built on June 17, 2020, 4:48 a.m.