geneCascadeHeatmap: Plot Gene Cascade Heatmap

In farrellja/URD: URD

Description

Plot Gene Cascade Heatmap

Usage

geneCascadeHeatmap(
  cascade,
  color.scale = RColorBrewer::brewer.pal(9, "YlOrRd"),
  add.time = NULL,
  times.annotate = seq(0, 1, 0.1),
  title = "",
  annotation.list = NULL,
  row.font.size = 1,
  max.font.size = 0.9
)

Arguments

cascade	(list) A processed gene cascade from geneCascadeProcess
color.scale	(Character vector) List of color values to use for the heatmap
add.time	(Character or NULL) Either the name of a column of @meta that contains actual time information to label the x-axis of the heatmap or NULL to instead use pseudotime
times.annotate	(Numeric vector)
annotation.list	Color bar
row.font.size	(Numeric) The font size of rows (gene names) should scale automatically, but this allows manual adjustment if needed.
max.font.size	(Numeric) This is used to prevent the font from getting big enough that it runs off the page.

farrellja/URD documentation built on June 17, 2020, 4:48 a.m.