Man pages for flajole/MApckg
R package of MetaboAnalyst functions
| ANOVA2.Anal | Two-way ANOVA |
| ANOVA.Anal | One-way ANOVA |
| EBAM.Anal | EBAM Fudge Factor |
| FC.Anal | Fold change |
| Kmeans.Anal | K-means analysis |
| PatternHunter | Pattern hunter |
| PCA.Anal | Perform PCA |
| PCA.Loadings | PCA loadings |
| PlotANOVA | Plot one-way ANOVA results |
| PlotANOVA2 | Plot two-way ANOVA results |
| PlotCorr | Plot pattern correlations |
| PlotCorrHeatMap | Plot correlations heatmap |
| PlotEBAM | Plot EBAM |
| PlotFC | Plot fold change |
| PlotHCTree | Plot dendrogram |
| PlotHeatMap2 | Plot two-factor heatmap |
| PlotKmeans | Plot K-means |
| PlotPCA | Plot PCA |
| PlotPLS | Plot PLS |
| PlotPLS.Imp | Plot PLS important features |
| PlotRF | Plot Random Forest |
| PlotRSVM | Plot RSVM |
| PlotSAM | Plot SAM |
| PlotSOM | Plot SOM |
| PlotSubHeatMap | Plot heatmap |
| PlotTT | Plot t-test results |
| PlotVolcano | Plot Volcano results |
| PLS.Anal | PLS analysis Uses '"oscorespls"' method of 'plsr' function .... |
| PLSDA.CV | PLSDA cross validation |
| PLSDA.Permut | Permutation PLSDA test |
| PLS.Loadings | PLS loadings |
| RF.Anal | Random Forests |
| RSVM.Anal | Support Vector Machine (SVM) |
| SAM.Anal | SAM analysis |
| SetColor | Set color schema |
| SetEBAMSigMat | EBAM matrix of significance |
| SetSAMSigMat | SAM matrix of significance |
| SetShape | Set shape schema |
| SOM.Anal | SOM analysis |
| Ttests.Anal | T-test |
| Volcano.Anal | Volcano |
