PlotSAM: Plot SAM

In flajole/MApckg: R package of MetaboAnalyst functions

Description

Functions for plotting the results of SAM.

PlotSAM.FDR - plot FDR.

PlotSAM.Cmpd - plot significant features.

Usage

PlotSAM.FDR(dataSet, analSet, delta = NULL, imgName = "sam_view_",
  format = "png", dpi = 72, width = NA)

PlotSAM.Cmpd(dataSet, analSet, imgName = "sam_imp_", format = "png",
  dpi = 72, width = NA)

Arguments

dataSet	List, data set object generated by MS_to_MA function.
analSet	List, containing the results of statistical analysis (can be just an empty list).
delta	The delta to control FDR. If NULL, then it's suggested automaticly
imgName	Image file name prefix.
format	Image format, one of: "png", "tiff", "pdf", "ps", "svg"
dpi	Image resolution.
width	Image width.

See Also

SAM.Anal, SetSAMSigMat for analytical functions

flajole/MApckg documentation built on May 16, 2019, 1:16 p.m.