PlotSOM: Plot SOM

In flajole/MApckg: R package of MetaboAnalyst functions

Description

Plot SOM map for less than 20 clusters. Please note : only cluster members will be calculated if the total cluster number (xdim*ydim) > 20. The blue lines represent the median intensities of each cluster.

Usage

PlotSOM(dataSet, analSet, imgName = "som_", format = "png", dpi = 72,
  width = NA)

Arguments

dataSet	List, data set object generated by MS_to_MA function.
analSet	List, containing the results of statistical analysis (can be just an empty list).
imgName	Image file name prefix.
format	Image format, one of: "png", "tiff", "pdf", "ps", "svg"
dpi	Image resolution.
width	Image width.

See Also

SOM.Anal for analytical function

flajole/MApckg documentation built on May 16, 2019, 1:16 p.m.