Description Usage Arguments Value See Also
Correlation analysis.
FeatureCorrelation
performs analysis against a given feature.
Writes an output file "correlation_feature.csv"
Match.Pattern
performs analysis against a given pattern.
Writes an output file "correlation_pattern.csv"
respectively.
1 2 3 | FeatureCorrelation(dataSet, analSet, dist.name = "pearson", varName)
Match.Pattern(dataSet, analSet, dist.name = "pearson", pattern = NULL)
|
dataSet |
List, data set object generated by |
analSet |
List, containing the results of statistical analysis (can be just an empty list). |
dist.name |
Method of correlation calculating, one of |
varName |
The name of the feature to perform correlation analysis against. |
pattern |
A character vector, the pattern to search. The pattern is specified as a series of numbers separated by "-". Each number corresponds to the expected expression pattern in the corresponding group. For example, a 1-2-3-4 pattern is used to search for features that increase linearly with time in a time-series data with four time points (or four groups). The order of the groups is given as the first item in the predefined patterns. |
Native analSet
with one added $corr
element consisting of
$corr$sig.nm
- ???
$corr$cor.mat
- correlation matrix
$corr$pattern
- name of the feature of comparison or the used pattern.
PlotCorr
, PlotCorrHeatMap
for plotting functions
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.