SetSAMSigMat: SAM matrix of significance
In flajole/MApckg: R package of MetaboAnalyst functions
Description
Usage
Arguments
Value
See Also
Description
SAM matrix of significance. Writes results to "sam_sigfeatures.csv" file.
Usage
1
SetSAMSigMat(dataSet, analSet, delta = 1.3)
Arguments
dataSet
List, data set object generated by MS_to_MA function.
analSet
List, containing the results of statistical analysis (can be just an empty list).
delta
The delta to control FDR
Value
Native analSet with two added elements:
$sam.cmpd - matrix containing d.value, stdev, rawp, q.value columns
$sam.delta - value of delta argument
See Also
SAM.Anal for analytical function
PlotSAM for plotting functions
flajole/MApckg documentation built on May 16, 2019, 1:16 p.m.
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Description Usage Arguments Value See Also
Description
SAM matrix of significance. Writes results to "sam_sigfeatures.csv" file.
Usage
1 | SetSAMSigMat(dataSet, analSet, delta = 1.3)
|
Arguments
dataSet |
List, data set object generated by |
analSet |
List, containing the results of statistical analysis (can be just an empty list). |
delta |
The delta to control FDR |
Value
Native analSet with two added elements:
$sam.cmpd- matrix containingd.value,stdev,rawp,q.valuecolumns$sam.delta- value ofdeltaargument
See Also
SAM.Anal for analytical function
PlotSAM for plotting functions
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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