ANOVA2.Anal: Two-way ANOVA

In flajole/MApckg: R package of MetaboAnalyst functions

Description

Performs two-way ANOVA. Creates a file with results: either "anova_within_sbj.csv" or "anova_between_sbj.csv" depending on type argument.

Usage

ANOVA2.Anal(dataSet, analSet, thresh = 0.05, p.cor = "fdr", type = "b")

Arguments

dataSet	List, data set object generated by MS_to_MA function.
analSet	List, containing the results of statistical analysis (can be just an empty list).
thresh	Threshold of significance.
p.cor	Method of p-value correction, one of p.adjust methods
type	Type of comparison. If "b" - between subjects; if "w" - within subjects

Value

Native analSet with one added $aov2 element consisting of:

• $type - value of type argument

• $sig.nm - name of file with the resulting ANOVA table

• $thresh - value of thresh argument

• $multi.c - value of p.cor argument

• $sig.mat - data frame of significant features

• $vennC - Venn counts

See Also

PlotANOVA2 for plotting functions
ANOVA.Anal for one-way analytical function

flajole/MApckg documentation built on May 16, 2019, 1:16 p.m.