Man pages for flajole/MApckg
R package of MetaboAnalyst functions

ANOVA2.AnalTwo-way ANOVA
ANOVA.AnalOne-way ANOVA
EBAM.AnalEBAM Fudge Factor
FC.AnalFold change
Kmeans.AnalK-means analysis
PatternHunterPattern hunter
PCA.AnalPerform PCA
PCA.LoadingsPCA loadings
PlotANOVAPlot one-way ANOVA results
PlotANOVA2Plot two-way ANOVA results
PlotCorrPlot pattern correlations
PlotCorrHeatMapPlot correlations heatmap
PlotEBAMPlot EBAM
PlotFCPlot fold change
PlotHCTreePlot dendrogram
PlotHeatMap2Plot two-factor heatmap
PlotKmeansPlot K-means
PlotPCAPlot PCA
PlotPLSPlot PLS
PlotPLS.ImpPlot PLS important features
PlotRFPlot Random Forest
PlotRSVMPlot RSVM
PlotSAMPlot SAM
PlotSOMPlot SOM
PlotSubHeatMapPlot heatmap
PlotTTPlot t-test results
PlotVolcanoPlot Volcano results
PLS.AnalPLS analysis Uses '"oscorespls"' method of 'plsr' function ....
PLSDA.CVPLSDA cross validation
PLSDA.PermutPermutation PLSDA test
PLS.LoadingsPLS loadings
RF.AnalRandom Forests
RSVM.AnalSupport Vector Machine (SVM)
SAM.AnalSAM analysis
SetColorSet color schema
SetEBAMSigMatEBAM matrix of significance
SetSAMSigMatSAM matrix of significance
SetShapeSet shape schema
SOM.AnalSOM analysis
Ttests.AnalT-test
Volcano.AnalVolcano
flajole/MApckg documentation built on May 16, 2019, 1:16 p.m.