PlotHCTree: Plot dendrogram
In flajole/MApckg: R package of MetaboAnalyst functions
Description
Plot hierarchical clustering tree.
Usage
1
2
PlotHCTree(dataSet, analSet, imgName = "tree_", format = "png", dpi = 72,
width = NA, smplDist = "euclidean", clstDist = "ward.D")
Arguments
dataSet
List, data set object generated by MS_to_MA function.
analSet
List, containing the results of statistical analysis (can be just an empty list).
imgName
Image file name prefix.
format
Image format, one of: "png", "tiff", "pdf", "ps", "svg"
dpi
Image resolution.
width
Image width.
smplDist
The distance measure. One of "euclidean", "spearman"
clstDist
The agglomeration method to be used, one of "ward.D", "ward.D2", "single", "complete", "average".
For details: hclust
flajole/MApckg documentation built on May 16, 2019, 1:16 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
Plot hierarchical clustering tree.
Usage
1 2 | PlotHCTree(dataSet, analSet, imgName = "tree_", format = "png", dpi = 72,
width = NA, smplDist = "euclidean", clstDist = "ward.D")
|
Arguments
dataSet |
List, data set object generated by |
analSet |
List, containing the results of statistical analysis (can be just an empty list). |
imgName |
Image file name prefix. |
format |
Image format, one of: "png", "tiff", "pdf", "ps", "svg" |
dpi |
Image resolution. |
width |
Image width. |
smplDist |
The distance measure. One of |
clstDist |
The agglomeration method to be used, one of "ward.D", "ward.D2", "single", "complete", "average".
For details: |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.