write.partitioned.nex: Write partitioned and commented NEXUS files

In fmichonneau/phyloch: Tools for phylogenetics and taxonomy

Description

This function takes one or more objects of class "DNAbin" and writes them to an interleaved NEXUS file.

Usage

write.partitioned.nex(..., file, labels)

Arguments

...	One or more objects of class "DNAbin"
file	character string giving a file name
labels	vector of mode "character"; used to label partitions; its length must match the number of gene partitions

Author(s)

Christoph Heibl

See Also

write.nex, write.phy, write.fas

Examples

# load sequence data and split in three parts
# -------------------------------------------
data(woodmouse)
w1 <- woodmouse[, 1:250]
w2 <- woodmouse[, 251:750]
w3 <- woodmouse[, 750:965]

# write nexus file with taxon block
# ---------------------------------
markers <- c("gene1", "gene2", "gene3")
write.partitioned.nex(w1, w2, w3, labels = markers)

fmichonneau/phyloch documentation built on May 16, 2019, 1:45 p.m.