Files in friendsofstrandseq/MaRyam
Genotyping Structural Variants from single-cell Strand-seq data.
.Rhistory
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
R/SVcalling.R
R/WCcount.R
R/chrNum.R
R/filter.R
R/final_plots.R
R/generateHaploStates.R
R/getDispParAndSegType.R
R/getPossibleCNs.R
R/hapAndGTprobsComputing.R
R/jumpProbs.R
R/nbFitting.R
R/readBams.R
R/wrapper_SVcalling.R
R/wrapper_formatChange.R
R/wrapper_readBamsWCcountAndNBfit.R
README.md
man/SVcalling_wrapperFunc.Rd
man/WCreadCounts.Rd
man/addJumpProbs.Rd
man/allStatus.Rd
man/bam2ranges.Rd
man/changeCellTypesFormat.Rd
man/changeNBparamsFormat.Rd
man/changeRCformat.Rd
man/chrNumber.Rd
man/countAndNBfit_wrapperFunc.Rd
man/decodeStatus.Rd
man/dispersionPar.Rd
man/estimateP.Rd
man/estimateR.Rd
man/filt.Rd
man/genotype_class.Rd
man/getCNprob.Rd
man/getGenotypeProbDataFrame.Rd
man/getGenotypeProbTable.Rd
man/getGenotypeStatus.Rd
man/getNextState.Rd
man/getPossibleCNs.Rd
man/getSegReadCounts.Rd
man/getSegType.Rd
man/get_GT_class_prob_table.Rd
man/getlegend.Rd
man/initialState.Rd
man/jumpProbs.Rd
man/newSVcalling.Rd
man/newgetCellStatProbabilities.Rd
man/newgetGenotypeProbTable.Rd
man/nonzeroCovBins.Rd
man/normalizeProbTable.Rd
man/plotHeatmapSegment.Rd
man/readBams.Rd
man/regularizeProbTable.Rd
man/setPanelHeights.Rd
man/sisterHaplotype.Rd
man/uniqueMappableBins.Rd
pipeline.R
todo.txt
