getCNprob: Generate a CN probability vector.
In friendsofstrandseq/MaRyam: Genotyping Structural Variants from single-cell Strand-seq data.
Description
Usage
Arguments
Author(s)
Description
Generate a CN probability vector.
Usage
1
getCNprob(readCount, p, r, segLen, binLen, maxCN = 5, alpha = 0.05)
Arguments
readCount
Total number of read counts (W+C) in all cells in this segment.
p
The p parameter of the NB distribution.
r
Dispersion parameter for the total number of read counts (W+C in all cells) in a bin with a diploid copy number (2).
segLen
The length of the segment.
binLen
The length of the bins used for estimating the NB parameters.
maxCN
The maximum number of CNs.
alpha
The coefficient of NB dispersion parameter for the number of background reads.
Author(s)
Maryam Ghareghani
friendsofstrandseq/MaRyam documentation built on May 28, 2019, 8:40 p.m.
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Description Usage Arguments Author(s)
Description
Generate a CN probability vector.
Usage
1 | getCNprob(readCount, p, r, segLen, binLen, maxCN = 5, alpha = 0.05)
|
Arguments
readCount |
Total number of read counts (W+C) in all cells in this segment. |
p |
The p parameter of the NB distribution. |
r |
Dispersion parameter for the total number of read counts (W+C in all cells) in a bin with a diploid copy number (2). |
segLen |
The length of the segment. |
binLen |
The length of the bins used for estimating the NB parameters. |
maxCN |
The maximum number of CNs. |
alpha |
The coefficient of NB dispersion parameter for the number of background reads. |
Author(s)
Maryam Ghareghani
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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