bam2ranges: Import BAM file into GRanges
In friendsofstrandseq/MaRyam: Genotyping Structural Variants from single-cell Strand-seq data.
Description
Usage
Arguments
Author(s)
Description
Import aligned reads from a BAM file into a GRanges object.
Usage
1
2
bam2ranges(file, bamindex = file, min.mapq = 10, pairedEndReads = FALSE,
chromosomes = NULL)
Arguments
file
Bamfile with aligned reads.
bamindex
Bam-index file with or without the .bai ending. If this file does not exist it will be created and a warning is issued.
min.mapq
Minimum mapping quality when importing from BAM files.
pairedEndReads
Set to TRUE if you have paired-end reads in your file.
Author(s)
David Porubsky
friendsofstrandseq/MaRyam documentation built on May 28, 2019, 8:40 p.m.
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Description Usage Arguments Author(s)
Description
Import aligned reads from a BAM file into a GRanges object.
Usage
1 2 | bam2ranges(file, bamindex = file, min.mapq = 10, pairedEndReads = FALSE,
chromosomes = NULL)
|
Arguments
file |
Bamfile with aligned reads. |
bamindex |
Bam-index file with or without the .bai ending. If this file does not exist it will be created and a warning is issued. |
min.mapq |
Minimum mapping quality when importing from BAM files. |
pairedEndReads |
Set to |
Author(s)
David Porubsky
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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