plotHeatmapSegment: Main heatmap function

In friendsofstrandseq/MaRyam: Genotyping Structural Variants from single-cell Strand-seq data.

Description

Main heatmap function

Usage

plotHeatmapSegment(dataFrame, ord.feature = NULL, plot.log = FALSE,
  file = NULL, aggProbs = F, CNV = 3, simplified = TRUE)

Arguments

dataFrame	The probability table for a segment with single cells in rows and genotypes/haplotypes in columns
ord.feature	The ordering feature used for sorting single cells (rows) in the heatmap. It can be NULL (kepping the input order), "SV_probs" (baded hierarchical clustering of SV_probs), "input_jump_p", and "output_jump_p".
plot.log	Binary option for plotting the heatmap in log scale
file	TODO write document
aggProbs	TODO write document
CNV	The maximum CN for plotting
simplified	If to plot simplified probability table e.g ("CN_loss","inv_CN2","normal_CN2","CN_gain")

Author(s)

David Porubsky, Maryam Ghareghani

friendsofstrandseq/MaRyam documentation built on May 28, 2019, 8:40 p.m.