Description Usage Arguments Author(s)
Returns all CNs with maximum probability.
1 | getPossibleCNs(segCounts, p, chrCellsDispPars, binLen, alpha)
|
segCounts |
W and C counts of one segment (a count |
p |
The p parameter of the NB distribution. |
chrCellsDispPars |
The dispersion parameters of cells for the chromosome where the segment resides. |
binLen |
The length of the bins used for estimating the NB parameters. |
alpha |
The coefficient of NB dispersion parameter for the number of background reads. |
Maryam Ghareghani
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