getPossibleCNs: Returns all CNs with maximum probability.
In friendsofstrandseq/MaRyam: Genotyping Structural Variants from single-cell Strand-seq data.
Description
Usage
Arguments
Author(s)
Description
Returns all CNs with maximum probability.
Usage
1
getPossibleCNs(segCounts, p, chrCellsDispPars, binLen, alpha)
Arguments
segCounts
W and C counts of one segment (a count data.frame with one row).
p
The p parameter of the NB distribution.
chrCellsDispPars
The dispersion parameters of cells for the chromosome where the segment resides.
binLen
The length of the bins used for estimating the NB parameters.
alpha
The coefficient of NB dispersion parameter for the number of background reads.
Author(s)
Maryam Ghareghani
friendsofstrandseq/MaRyam documentation built on May 28, 2019, 8:40 p.m.
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Description Usage Arguments Author(s)
Description
Returns all CNs with maximum probability.
Usage
1 | getPossibleCNs(segCounts, p, chrCellsDispPars, binLen, alpha)
|
Arguments
segCounts |
W and C counts of one segment (a count |
p |
The p parameter of the NB distribution. |
chrCellsDispPars |
The dispersion parameters of cells for the chromosome where the segment resides. |
binLen |
The length of the bins used for estimating the NB parameters. |
alpha |
The coefficient of NB dispersion parameter for the number of background reads. |
Author(s)
Maryam Ghareghani
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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