countAndNBfit_wrapperFunc: Counts the number of Watson and Crick reads of single cells...
In friendsofstrandseq/MaRyam: Genotyping Structural Variants from single-cell Strand-seq data.
Description
Usage
Arguments
Author(s)
Description
Counts the number of Watson and Crick reads of single cells in bins and segments and fitting NB distribution.
Usage
1
2
countAndNBfit_wrapperFunc(segmentsFile, tempDir, bamDir, directory, bin.size,
K = 22)
Arguments
segmentsFile
The name of the segments bed file.
bamDir
The directory containing all of the bam files.
directory
The directory containing the input and output files.
bin.size
The size of the bins.
K
the number of chromosomes (autosomes).
temDir
The directory containing the chromosomes length file.
Author(s)
Maryam Ghareghani
friendsofstrandseq/MaRyam documentation built on May 28, 2019, 8:40 p.m.
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Description Usage Arguments Author(s)
Description
Counts the number of Watson and Crick reads of single cells in bins and segments and fitting NB distribution.
Usage
1 2 | countAndNBfit_wrapperFunc(segmentsFile, tempDir, bamDir, directory, bin.size,
K = 22)
|
Arguments
segmentsFile |
The name of the segments bed file. |
bamDir |
The directory containing all of the bam files. |
directory |
The directory containing the input and output files. |
bin.size |
The size of the bins. |
K |
the number of chromosomes (autosomes). |
temDir |
The directory containing the chromosomes length file. |
Author(s)
Maryam Ghareghani
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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