newgetCellStatProbabilities: Returns a matrix of haplotype (rows) pobabilities in...

In friendsofstrandseq/MaRyam: Genotyping Structural Variants from single-cell Strand-seq data.

Description

Returns a matrix of haplotype (rows) pobabilities in different single cells (columns).

Usage

newgetCellStatProbabilities(hapStatus, counts, chrCellTypes, p,
  chrCellsDispPars, binLength, alpha, haplotypeMode = FALSE)

Arguments

hapStatus	A vector of decoded halotype status (strings).
counts	A one row data.frame containing the read counts of the segment.
chrCellTypes	Cell types in the chromosome where the segment lies.
p	The p parameter of the NB distribution.
chrCellsDispPars	The dispersion parameters of cells for the chromosome where the segment resides.
alpha	The coefficient of NB dispersion parameter for the number of background reads.
haplotypeMode	TODO ...

Author(s)

Maryam Ghareghani

friendsofstrandseq/MaRyam documentation built on May 28, 2019, 8:40 p.m.