readGenoCSV: Read yeast genotype data from a CSV file.
In gact/shmootl: QTL Analysis Utilities for Yeast
Description
Usage
Arguments
Details
See Also
Description
This function reads yeast cross genotype data from an R/qtl CSV file
and returns a geno object. The returned geno object has an
attribute 'info' of type CrossInfo. This
CrossInfo object contains information about the
genotype data, including sample IDs, which must be present in the
input genotype data file.
Usage
1
readGenoCSV(infile, require.mapunit = TRUE)
Arguments
infile
Input CSV file path.
require.mapunit
Require map unit information in map positions.
Details
By default, any genetic map positions must include map units (i.e.
'cM'). To read a genotype file without requiring map units,
set parameter require.mapunit to FALSE. If map units
are not required and not found, map positions are assumed to be in
centiMorgans.
See Also
Other CSV functions: hasMapCSV,
readCovarCSV, readCrossCSV,
readMapCSV, readMapframeCSV,
readPhenoCSV, recodeCSV,
sniffCSV, writeCrossCSV,
writeGenoCSV, writeMapCSV,
writeMapframeCSV,
writePhenoCSV
gact/shmootl documentation built on Nov. 11, 2021, 6:23 p.m.
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Description Usage Arguments Details See Also
Description
This function reads yeast cross genotype data from an R/qtl CSV file
and returns a geno object. The returned geno object has an
attribute 'info' of type CrossInfo. This
CrossInfo object contains information about the
genotype data, including sample IDs, which must be present in the
input genotype data file.
Usage
1 | readGenoCSV(infile, require.mapunit = TRUE)
|
Arguments
infile |
Input CSV file path. |
require.mapunit |
Require map unit information in map positions. |
Details
By default, any genetic map positions must include map units (i.e.
'cM'). To read a genotype file without requiring map units,
set parameter require.mapunit to FALSE. If map units
are not required and not found, map positions are assumed to be in
centiMorgans.
See Also
Other CSV functions: hasMapCSV,
readCovarCSV, readCrossCSV,
readMapCSV, readMapframeCSV,
readPhenoCSV, recodeCSV,
sniffCSV, writeCrossCSV,
writeGenoCSV, writeMapCSV,
writeMapframeCSV,
writePhenoCSV
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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