Description Usage Arguments Details See Also
This function recodes the data in an R/qtl cross or genotype CSV file.
Genotypes can be recoded by passing to the geno
parameter a simple
mapping
of old to new genotypes. Alternatively, genotype data
can be converted to enumerated genotypes by setting parameter
enum.geno
to TRUE
.
1 |
infile |
Input CSV file path. |
outfile |
Output CSV file path. |
geno |
A simple |
enum.geno |
Option indicating if genotype data should be recoded as
enumerated genotypes (incompatible with |
Any mapping
of old to new symbols must be complete and
unambiguous. All existing values must be mapped to a new value, and
data with different input values cannot have the same output value.
Other CSV functions: hasMapCSV
,
readCovarCSV
, readCrossCSV
,
readGenoCSV
, readMapCSV
,
readMapframeCSV
,
readPhenoCSV
, sniffCSV
,
writeCrossCSV
, writeGenoCSV
,
writeMapCSV
,
writeMapframeCSV
,
writePhenoCSV
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