writeCrossCSV: Write yeast 'cross' to a CSV file.

In gact/shmootl: QTL Analysis Utilities for Yeast

Description

This function writes a yeast cross to an R/qtl CSV file. Phenotype, genotype, and sample IDs are taken from the 'info' attribute of the cross, if present.

Usage

writeCrossCSV(cross, outfile, chr = NULL, digits = NULL,
  include.mapunit = TRUE)

Arguments

cross	An R/qtl cross object.
outfile	Output CSV file path.
chr	Vector of sequences for which genotype data should be included in the output file. If none are specified, genotype data are output for all sequences.
digits	If specified, round genetic map positions and numeric phenotype values to the specified number of digits.
include.mapunit	Include map unit information in map positions.

See Also

Other CSV functions: hasMapCSV, readCovarCSV, readCrossCSV, readGenoCSV, readMapCSV, readMapframeCSV, readPhenoCSV, recodeCSV, sniffCSV, writeGenoCSV, writeMapCSV, writeMapframeCSV, writePhenoCSV

Other cross object functions: crossesEqual, getIdColIndex, getPhenoColIndices, hasTimeSeriesPhenotypes, inferStrainIndices, inferTetradIndices, inferTimeStep, interpTimeSeries, padTimeSeries, permCross, permIndices, pull.alleles, pull.chr, pull.crosstype, pull.ind, readCrossCSV, readCrossHDF5, writeCrossHDF5

gact/shmootl documentation built on Nov. 11, 2021, 6:23 p.m.