writeGenoCSV: Write yeast genotype data to a CSV file.
In gact/shmootl: QTL Analysis Utilities for Yeast
Description
Usage
Arguments
See Also
Description
This function writes a yeast geno object to an
R/qtl CSV file. The geno object must have an attribute
'info' of type CrossInfo, from which
genotype and sample IDs are taken.
Usage
1
2
writeGenoCSV(geno, outfile, chr = NULL, digits = NULL,
include.mapunit = TRUE)
Arguments
geno
An R/qtl cross geno object.
outfile
Output CSV file path.
chr
Vector of sequences for which genotype data should be included in
the output file. If none are specified, a genotype file is output for all
available sequences.
digits
If specified, round genetic map positions to the specified
number of digits.
include.mapunit
Include map unit information in map positions.
See Also
Other CSV functions: hasMapCSV,
readCovarCSV, readCrossCSV,
readGenoCSV, readMapCSV,
readMapframeCSV,
readPhenoCSV, recodeCSV,
sniffCSV, writeCrossCSV,
writeMapCSV,
writeMapframeCSV,
writePhenoCSV
gact/shmootl documentation built on Nov. 11, 2021, 6:23 p.m.
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Description Usage Arguments See Also
Description
This function writes a yeast geno object to an
R/qtl CSV file. The geno object must have an attribute
'info' of type CrossInfo, from which
genotype and sample IDs are taken.
Usage
1 2 | writeGenoCSV(geno, outfile, chr = NULL, digits = NULL,
include.mapunit = TRUE)
|
Arguments
geno |
An R/qtl |
outfile |
Output CSV file path. |
chr |
Vector of sequences for which genotype data should be included in the output file. If none are specified, a genotype file is output for all available sequences. |
digits |
If specified, round genetic map positions to the specified number of digits. |
include.mapunit |
Include map unit information in map positions. |
See Also
Other CSV functions: hasMapCSV,
readCovarCSV, readCrossCSV,
readGenoCSV, readMapCSV,
readMapframeCSV,
readPhenoCSV, recodeCSV,
sniffCSV, writeCrossCSV,
writeMapCSV,
writeMapframeCSV,
writePhenoCSV
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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