writeGenoCSV: Write yeast genotype data to a CSV file.

Description Usage Arguments See Also

View source: R/csv.R

Description

This function writes a yeast geno object to an R/qtl CSV file. The geno object must have an attribute 'info' of type CrossInfo, from which genotype and sample IDs are taken.

Usage

1
2
writeGenoCSV(geno, outfile, chr = NULL, digits = NULL,
  include.mapunit = TRUE)

Arguments

geno

An R/qtl cross geno object.

outfile

Output CSV file path.

chr

Vector of sequences for which genotype data should be included in the output file. If none are specified, a genotype file is output for all available sequences.

digits

If specified, round genetic map positions to the specified number of digits.

include.mapunit

Include map unit information in map positions.

See Also

Other CSV functions: hasMapCSV, readCovarCSV, readCrossCSV, readGenoCSV, readMapCSV, readMapframeCSV, readPhenoCSV, recodeCSV, sniffCSV, writeCrossCSV, writeMapCSV, writeMapframeCSV, writePhenoCSV


gact/shmootl documentation built on Nov. 11, 2021, 6:23 p.m.