Class `HostspotsMatrix`

This class is use to create an object that will represent the submap created

`submap`

a vector of index

`ncol`

number of loci

`nrow`

number of individual

`ped`

the first 6 columns of a .ped

`map`

id, chr, distance

`epsilon`

value of epsilon = genotyping error rare, to use for computing log emission precalculated at initialisation

`delta.dist`

difference of map$distance

`log.emiss`

matrix of log proba emission if statut = 0 or 1(2 nb inds x nb msats)

`a`

value of a estimated by festim

`f`

value of f estimated by festim

`likelihood0`

likelihood under H0 (f = 0)

`likelihood1`

likelihood under H1

`p.lrt`

likelihood ratio test

`HBD.prob`

proba HBD = 1 ; one individual per column : dim = (nb inds x nb msats)

`FLOD`

matrix of FLOD scores dim = (nb inds x nb msats)

Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.