Files in genostats/Fantasio
Genetic Data Analyses in Presence of Inbreeding

.gitignore
DESCRIPTION
NAMESPACE
QUESTIONS
R/Fantasio.r R/HBDplotChr.r R/HBDplotId.r R/HBDsegments.by.segments.r R/HBDsegments.by.snps.r R/HBDsegments.r R/HFLODManhattanPlot.r R/HFLODplotChr.r R/add_cM.r R/atlas.r R/bed_logemiss.r R/cleanHotspots.r R/color.r R/data.r R/fMatrix.r R/festim.r R/forward.backward.r R/getMarkerChromosomByDistance.r R/get_log_emiss.r R/hotspotsMatrix.r R/hotspotsSegments.r R/import_export.r R/lengthChromosome.r R/likelihood.r R/likelihood_gradient.r R/logProbaEmission.r R/makeAtlasByDistance.r R/makeAtlasByHotspots.r R/makeSubmapByDistance.r R/makeSubmapByHotspots.r R/markerRepresentation.r R/markerSummary.r R/msat_matrix.r R/null.remover.r R/paintCytobands.r R/plot.HBD.segments.chr.r R/plot.HBD.segments.id.r R/plot.ROH.segments.chr.r R/plot.ROH.segments.id.r R/plot.segments.chr.r R/plot.segments.id.r R/read_msat_matrix.r R/recap.by.segments.r R/recap.by.snps.r R/recap.r R/segmentsListByDistance.r R/segmentsListByHotspots.r R/segmentsListSummary.r R/select.marker.downstream.r R/select.marker.uphill.r R/setAllelicFrequencies.r R/setFLOD.r R/setHBDprob.r R/setHFLOD.r R/setStatus.r R/setSummary.r R/simus.r R/snpsMatrix.r R/snpsSegments.r R/submap.FLOD.recap.r R/submap.HBD.recap.r R/submapEstim.r R/submapLikelihood.r R/submapSummary.r R/unit.plot.chr.r R/unit.plot.id.r
TODO
data/cytobands.b35.rda
data/cytobands.b36.rda
data/cytobands.b37.rda
data/cytobands.b38.rda
data/datalist
data/hotspot_hg17.rda
data/hotspot_hg18.rda
data/hotspot_hg19.rda
inst/extdata/data_msat.in
inst/extdata/data_snp.in
inst/extdata/in_datall.txt
inst/extdata/in_markall.txt
inst/extdata/map_msat.in
inst/extdata/map_snp.in
man/Fantasio.Rd man/HBDplotChr.Rd man/HBDplotId.Rd man/HBDsegments.Rd man/HFLODManhattanPlot.Rd man/HFLODplotChr.Rd man/HostspotsMatrix-class.Rd man/HostspotsSegments-class.Rd man/atlas-class.Rd man/cytobands.Rd man/dim-fMatrix-method.Rd man/fMatrix-class.Rd man/festim.Rd man/hotspot.Rd man/initialize-HostspotsMatrix-method.Rd man/initialize-atlas-method.Rd man/initialize-fMatrix-method.Rd man/initialize-snpsMatrix-method.Rd man/initialize-snpsSegments-method.Rd man/makeAtlasByDistance.Rd man/makeAtlasByHotspots.Rd man/makeSubmapByDistance.Rd man/makeSubmapByHotspots.Rd man/markerRepresentation.Rd man/markerSummary.Rd man/plot.ROH.segments.chr.Rd man/plot.ROH.segments.id.Rd man/recap.Rd man/segmentsListByDistance.Rd man/segmentsListByHotspots.Rd man/segmentsListSummary.Rd man/setAllelicFrequencies.Rd man/setFLOD.Rd man/setHBDprob.Rd man/setHFLOD.Rd man/setStatus.Rd man/setSummary.Rd man/show-HostspotsMatrix-method.Rd man/show-HostspotsSegments-method.Rd man/show-atlas-method.Rd man/show-fMatrix-method.Rd man/show-snpsMatrix-method.Rd man/show-snpsSegments-method.Rd man/snpsMatrix-class.Rd man/snpsSegments-class.Rd man/submapEstim.Rd man/submapLikelihood.Rd man/submapSummary.Rd man/summaryMarker.Rd
src/LSE.h
src/fantasio_init.c
src/forward_backward.cpp
src/likelihood.cpp
src/likelihood_gradient.cpp
src/logEmiss.cpp
src/m4_logEmiss.cpp
src/matrix4.cpp
src/simus.cpp
vignettes/Fantasio.Rmd
vignettes/Fantasio_files/figure-markdown_mmd/fig1-1.png
vignettes/Fantasio_files/figure-markdown_mmd/fig2-1.png
vignettes/Fantasio_files/figure-markdown_mmd/fig3-1.png
vignettes/Fantasio_files/figure-markdown_mmd/fig4-1.png
vignettes/Fantasio_files/figure-markdown_strict/fig1-1.png
vignettes/Fantasio_files/figure-markdown_strict/fig2-1.png
vignettes/Fantasio_files/figure-markdown_strict/fig3-1.png
vignettes/Fantasio_files/figure-markdown_strict/fig4-1.png
genostats/Fantasio documentation built on June 30, 2019, 2:25 a.m.