plotROHSegmentsId: Creation of plot using ROH file

In genostats/Fantasio: Genetic Data Analyses in Presence of Inbreeding

Creation of plot using ROH file

Description

This function plots HBDsegments for a specific individual using an ROH file

Usage

plotROHSegmentsId(
  Submaps,
  ROH,
  unit = "cM",
  regions,
  outfile,
  famid,
  id,
  build
)

Arguments

Submaps	a atlas object
ROH	a data frame
unit	the unit used to plot, two options are allowed "Bases", "cM" (default is "CM")
regions	a matrix containing the value to ve highlighted in the plot
outfile	the name of the plot
famid	the family id of the individual wanted
id	the individual id of the individual wanted
build	the value of the build to use to plot chromosome in the plot value accepted are 35, 36, 37, 38 (default is 37)

Details

Use this function when you want to use an ROH file to plot your HBDsegments for a specific individual.

Two unit are accepted : "Bases" or "cM".

If you use the regions options make sure to pass a matrix containing one line per region to be highlighted with in each line :

-the chromosome number

-start

-end

Value

This function returns a plot of the HBDsegments for a specific individual

genostats/Fantasio documentation built on Feb. 2, 2023, 5:28 p.m.