hotspot | R Documentation |
These datasets are data frames containing position and intensity of hotspots in the human genome, for releases hg17 (build 35), hg18 (build 36) and hg19 (build 37). The hotspot for hg17 were downloaded from the HapMap ftp repository. They were converted to other builds (hg18, hg19) using hgLiftOver.
data(hotspot_hg17)
Data frames with 32996 rows and 7 variables
The variables are:
Chromosome. Chromosome number
Centre. Center of the hotspots in Mb
Start. Start of the hotspot
End. End of the hotspot
Widthkb. Width of the hotposts in kb
IntensitycMMb. Intensity in cM / Mb
TotaldistancecM. Total distance in cM
Hg17 hotspots: ftp://ftp.ncbi.nlm.nih.gov/hapmap/recombination/2006-10_rel21_phaseI+II/hotspots/hotspots.txt.gz
hgLiftOver: http://genome.ucsc.edu/cgi-bin/hgLiftOver
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