View source: R/makeSubmapByDistance.r
makeSubmapByDistance | R Documentation |
This function creates a submap using the list segments created by using gap between markers
makeSubmapByDistance(bedmatrix, segmentsList, epsilon = 0.001, snpIndices)
bedmatrix |
a bed.matrix object |
segmentsList |
a list of segments for each chromosome |
epsilon |
genotype error rate (default is 0.001) |
snpIndices |
(optional) You have the possibility to pass your own list of markers |
If snpIndices is given, the function creates a submap corresponding to the given SNPs.
Otherwise, the function iterates over the list of segments, then for each segments it picks randomly one marker and from this marker choses a marker every "step" step from back to end.
return an snpsMatrix object
makeAtlasByDistance
#Please refer to vignette
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