API for genostats/Fantasio
Genetic Data Analyses in Presence of Inbreeding

Global functions
Fantasio Man page
Fantasio-package Man page
HBDplotChr Man page Source code
HBDplotId Man page Source code
HBDsegments Man page Source code
HBDsegments.by.segments Source code
HBDsegments.by.snps Source code
HFLODManhattanPlot Man page Source code
HFLODplotChr Man page Source code
HostspotsMatrix-class Man page
HostspotsSegments-class Man page
Likelihood Source code
Likelihood.gradient Source code
atlas-class Man page
bed.logEmiss Source code
cleanHotspots Source code
cytobands Man page
cytobands.b35 Man page
cytobands.b36 Man page
cytobands.b37 Man page
cytobands.b38 Man page
dim,fMatrix-method Man page
fMatrix-class Man page
festim Man page Source code
festim_fmatrix Source code
festim_submapslist Source code
forward.backward Source code
get.famid Source code
get.id Source code
get.log.emiss Source code
getMarkerChromosom Source code
getMarkerChromosomByDistance Source code
hotspot Man page
hotspot_hg17 Man page
hotspot_hg18 Man page
hotspot_hg19 Man page
initialize,HostspotsMatrix-method Man page
initialize,atlas-method Man page
initialize,fMatrix-method Man page
initialize,snpsMatrix-method Man page
initialize,snpsSegments-method Man page
log.proba.emission Source code
makeAtlasByDistance Man page Source code
makeAtlasByHotspots Man page Source code
makeSubmapByDistance Man page Source code
makeSubmapByHotspots Man page Source code
markerRepresentation Man page Source code
markerSummary Man page Source code
msat.log.emiss Source code
null.remover Source code
plot.HBDsegments.chr Source code
plot.HBDsegments.id Source code
plot.ROH.segments.chr Man page Source code
plot.ROH.segments.id Man page Source code
plot.segments.chr Source code
random.msat Source code
read.msat.matrix Source code
recap Man page Source code
recap.by.segments Source code
recap.by.snps Source code
segmentsListByDistance Man page Source code
segmentsListByHotspots Man page Source code
segmentsListSummary Man page Source code
select.marker.downstream Source code
select.marker.uphill Source code
setAllelicFrequencies Man page Source code
setFLOD Man page Source code
setHBDprob Man page Source code
setHFLOD Man page Source code
setStatus Man page Source code
setSummary Man page
show,HostspotsMatrix-method Man page
show,HostspotsSegments-method Man page
show,atlas-method Man page
show,fMatrix-method Man page
show,snpsMatrix-method Man page
show,snpsSegments-method Man page
snpsMatrix-class Man page
snpsSegments-class Man page
submap.FLOD Source code
submap.HBD Source code
submapEstim Man page Source code
submapLikelihood Man page Source code
submapSummary Man page Source code
summaryMarker Man page
unique.ids Source code
unit.plot.chr Source code
unit.plot.id Source code
genostats/Fantasio documentation built on Sept. 20, 2020, 12:53 a.m.