Class defines a mother class for all the subclasses in the package Fantasio.
number of loci
number of individual
the first 6 columns of a .ped
id, chr, distance
value of epsilon = genotyping error rare, to use for computing log emission precalculated at initialisation
difference of map$distance
matrix of log proba emission if statut = 0 or 1(2 nb inds x nb msats)
value of a estimated by festim
value of f estimated by festim
likelihood under H0 (f = 0)
likelihood under H1
likelihood ratio test
proba HBD = 1 ; one individual per column : dim = (nb inds x nb msats)
matrix of FLOD scores dim = (nb inds x nb msats)
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