fMatrix-class | R Documentation |
Class defines a mother class for all the subclasses in the package Fantasio.
ncol
number of loci
nrow
number of individual
ped
the first 6 columns of a .ped
map
id, chr, distance
epsilon
value of epsilon = genotyping error rare, to use for computing log emission precalculated at initialisation
delta.dist
difference of map$distance
log.emiss
matrix of log proba emission if statut = 0 or 1(2 nb inds x nb msats)
a
value of a estimated by festim
f
value of f estimated by festim
likelihood0
likelihood under H0 (f = 0)
likelihood1
likelihood under H1
p.lrt
likelihood ratio test
HBD.prob
proba HBD = 1 ; one individual per column : dim = (nb inds x nb msats)
FLOD
matrix of FLOD scores dim = (nb inds x nb msats)
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