setFLOD: Computation of FLOD scores

Description Usage Arguments Details Value See Also

Description

This function is uses to compute FLOD scores on individual present in a sample

Usage

1
setFLOD(submaps, condition, q = 1e-04)

Arguments

submaps

a atlas object

condition

A vector containing a list of individuals. Only this list of individuals will have their FLOD scores computed

q

Allows the user to choose the assumed frequency of the mutation involved in the disease for each individual. Default is 0.0001.

Details

This function iterates over the slots submaps_list of the atlas object.

For each submaps in the slots submaps_list of the object, the slot FLOD.prob will be filled with a matrix of dimension : number_inidividual x number_of_markers

Value

the atlas object with each FLOD.prob slot of each submaps in the slot submaps_list computed

See Also

setHBDprob

setHFLOD


genostats/Fantasio documentation built on June 30, 2019, 2:25 a.m.