setHBDProbAndFLOD: Computation of HBD probabilities and FLOD scores by segments

In genostats/Fantasio: Genetic Data Analyses in Presence of Inbreeding

Computation of HBD probabilities and FLOD scores by segments

Description

This function is used to compute HBD probabilities and FLOD scores on individuals in a sample

Usage

setHBDProbAndFLOD(atlas, w.id, q = 1e-04)

Arguments

atlas	an atlas object
w.id	The indices of individals for which HBD probabilities are computed

Details

This function iterates over the slots submaps_list of the atlas object.

For each submaps in the slots submaps_list of the object, the slots HBD_recap and FLOD_recap will be updated with a matrix of dimension : number_individual x number_of_segments

Value

the atlas object with HBD_recap and FLOD_recap by segments

See Also

setHBDProbAndFLODBySnps

setHFLOD

genostats/Fantasio documentation built on Feb. 2, 2023, 5:28 p.m.