Files in giangnguyen0709/fCAT
fCAT
DESCRIPTION
LICENSE
NAMESPACE
R/.Rhistory
R/busco.R
R/checkCompleteness.R
R/computeOriginal.R
R/computeReport.R
R/correctFiles.R
R/extractGenome.R
R/getResult.R
R/placeSeed.R
R/processCoreSet.R
R/runFdog.R
README.md
inst/extdata/HUMAN@9606@3.fa
inst/extdata/HUMAN@9606@3.json
inst/extdata/sample/blast_dir/ECOLI@511145@1/ECOLI@511145@1.fa
inst/extdata/sample/blast_dir/ECOLI@511145@1/ECOLI@511145@1.fa.checked
inst/extdata/sample/blast_dir/ECOLI@511145@1/ECOLI@511145@1.phr
inst/extdata/sample/blast_dir/ECOLI@511145@1/ECOLI@511145@1.pin
inst/extdata/sample/blast_dir/ECOLI@511145@1/ECOLI@511145@1.psq
inst/extdata/sample/blast_dir/HUMAN@9606@1/HUMAN@9606@1.fa
inst/extdata/sample/blast_dir/HUMAN@9606@1/HUMAN@9606@1.fa.checked
inst/extdata/sample/blast_dir/HUMAN@9606@1/HUMAN@9606@1.phr
inst/extdata/sample/blast_dir/HUMAN@9606@1/HUMAN@9606@1.pin
inst/extdata/sample/blast_dir/HUMAN@9606@1/HUMAN@9606@1.psq
inst/extdata/sample/blast_dir/YEAST@559292@1/YEAST@559292@1.fa
inst/extdata/sample/blast_dir/YEAST@559292@1/YEAST@559292@1.fa.checked
inst/extdata/sample/blast_dir/YEAST@559292@1/YEAST@559292@1.phr
inst/extdata/sample/blast_dir/YEAST@559292@1/YEAST@559292@1.pin
inst/extdata/sample/blast_dir/YEAST@559292@1/YEAST@559292@1.psq
inst/extdata/sample/core_orthologs/test/530670/530670.aln
inst/extdata/sample/core_orthologs/test/530670/530670.fa
inst/extdata/sample/core_orthologs/test/530670/fas_dir/annotation_dir/530670.json
inst/extdata/sample/core_orthologs/test/530670/fas_dir/score_dir/1.cutoff
inst/extdata/sample/core_orthologs/test/530670/fas_dir/score_dir/2.cutoff
inst/extdata/sample/core_orthologs/test/530670/hmm_dir/530670.hmm
inst/extdata/sample/core_orthologs/test/530730/530730.aln
inst/extdata/sample/core_orthologs/test/530730/530730.fa
inst/extdata/sample/core_orthologs/test/530730/fas_dir/annotation_dir/530730.json
inst/extdata/sample/core_orthologs/test/530730/fas_dir/score_dir/1.cutoff
inst/extdata/sample/core_orthologs/test/530730/fas_dir/score_dir/2.cutoff
inst/extdata/sample/core_orthologs/test/530730/hmm_dir/530730.hmm
inst/extdata/sample/genome_dir/ECOLI@511145@1/ECOLI@511145@1.fa
inst/extdata/sample/genome_dir/HUMAN@9606@1/HUMAN@9606@1.fa
inst/extdata/sample/genome_dir/YEAST@559292@1/YEAST@559292@1.fa
inst/extdata/sample/weight_dir/ECOLI@511145@1.json
inst/extdata/sample/weight_dir/HUMAN@9606@1.json
inst/extdata/sample/weight_dir/YEAST@559292@1.json
man/arrangeCompletenessOutput.Rd
man/arrangePPOutput.Rd
man/assessBusco.Rd
man/assessStatus.Rd
man/autofindPriority.Rd
man/calculateAllCutoff.Rd
man/calculateBuscoCutoff.Rd
man/calculateCutoff.Rd
man/checkArguments.Rd
man/checkCompleteness.Rd
man/checkPreProcess.Rd
man/computeOriginal.Rd
man/computeReport.Rd
man/concanateFiles.Rd
man/correctDomains.Rd
man/correctFasta.Rd
man/correctFiles.Rd
man/correctPP.Rd
man/createAllAnnotation.Rd
man/createAnnotation.Rd
man/extractDomains.Rd
man/extractFasta.Rd
man/extractPP.Rd
man/filterIgnore.Rd
man/getSpec.Rd
man/handleError.Rd
man/placeSeed.Rd
man/processCoreSet.Rd
man/recalculateScore.Rd
man/reportSingle.Rd
man/runFdog.Rd
man/runFdogBusco.Rd
man/translateReport.Rd
man/updateExFasta.Rd
man/updateLength.Rd
