basesToGenotypes: Transform bases into genotypes
In grafab/pergola: Toolbox for Polyploid Genetic Data
Description
Usage
Arguments
Value
Examples
Description
Preprocess the input data in case bases are provided instead of genotypes
Usage
1
basesToGenotypes(input, ploidy)
Arguments
input
Matrix of genotype bases. Rows represent the individual markers.
Columns represent samples, dependenden on the ploidy.
ploidy
Ploidy level of the organism.
Influences how many columns are collapsed into one.
Value
Matrix of genotypes.
The number of columns is 1/ploidy of the input.
Examples
1
2
grafab/pergola documentation built on May 17, 2019, 8:18 a.m.
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Description Usage Arguments Value Examples
Description
Preprocess the input data in case bases are provided instead of genotypes
Usage
1 | basesToGenotypes(input, ploidy)
|
Arguments
input |
Matrix of genotype bases. Rows represent the individual markers. Columns represent samples, dependenden on the ploidy. |
ploidy |
Ploidy level of the organism. Influences how many columns are collapsed into one. |
Value
Matrix of genotypes.
The number of columns is 1/ploidy of the input.
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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