plotChr: Plotting one or two linkage maps
In grafab/pergola: Toolbox for Polyploid Genetic Data

Description Usage Arguments Value Examples

Visualization of one or two linkage maps. Used as comparison between two different maps (e.g. different parameters or linkage mapping tools).

1	plotChr(map1, map2 = NULL, cex = 1, labels = c("Map 1", "Map 2"), ...)

`map1`	Numeric vector with marker positions.
`map2`	Optional second map for comparison.
`cex`	Font size in the figure.
`labels`	Labels for the two blocks
`...`	arguments are forwarded to `plot`.

None. Plotting only.

data(simTetra)
simTetraGen <- basesToGenotypes(simTetra, 4)
rfMat <- calcRec(simTetraGen, 4)
split <- splitChr(rfMat, nchr = 7)
split <- sortLeafs(rfMat, split)
map <- pullMap(rfMat, split = split)
plotChr(map[[1]])