mapToDend: Transforming a map into a dendrogram
In grafab/pergola: Toolbox for Polyploid Genetic Data

Description Usage Arguments Value Examples

Create dendrogram object. The map specific distance are ignored and only the grouping and ordering is maintained. Allows for comparison of whole map with package 'dendextend'

1	mapToDend(map, mergeoff = 0L)

`map`	One map. Required.
`mergeoff`	Numeric, offset between chromosomes, to avoid equal heights in dendrogram. Equal heights lead to problems in cor_bakers_gamma().

Dendogram object.

data(simTetra)
simTetrageno <- basesToGenotypes(simTetra, 4)
rfMat <- calcRec(simTetrageno, 4)
split <- splitChr(rfMat, nchr = 7)
split <- sortLeafs(rfMat, split)
map <- pullMap(rfMat, split = split)   
dend <- mapToDend(map)  
plot(dend)